THE SOURCE MANUSCRIPT · JUNE 15, 2026 · VERSION 2

A Mechanistic Model of Hominin Evolution Through Recursive Physiological Stress

Christopher Gomes · Independent Researcher

Existing Zenodo record: 10.5281/zenodo.20598460. The corrected version 2 download is provided here separately.

Website edition: the download and source passages reproduce the corrected version 2 manuscript, including the reference corrections, maternal-hair clarification and revised AHR discussion. The Zenodo link identifies the existing archive record; this website update does not publish version 2 to Zenodo.

Abstract

This paper introduces a systems-level, mechanistic framework that reframes hominin evolution as a prolonged, recursive response to persistent environmental and physiological stress across the Neogene and Quaternary. Departing from classical stochastic paradigms centered upon isolated anatomical innovations or linear selection for intelligence, the model proposes that human evolutionary history emerged as a cascade of tightly coupled, interacting feedback loops spanning climate variability, ecomorphology, terrestrial adaptation, energetics, and neural scaling. Long-term trends toward African aridification and severe, high-amplitude environmental oscillations across the Sahel-Rift corridor continuously penalized narrow ecological specialization, systematically favoring generalized biological and behavioral flexibility. The resulting early hominin adaptive suite—characterized by facultative bipedalism, extensive eccrine sweating, structural hair reduction, and endurance locomotion—is modeled as a coordinated, multi-system survival strategy to manage these unstable resource and thermoregulatory landscapes.

Within this foundational adaptive framework, encephalization is hypothesized to have proceeded through two distinct yet recursively interacting neuroadaptive pathways. The first represents a slow, evolutionary baseline of structural scaling driven by cumulative network connectivity burdens over millions of years. The second, highly accelerated pathway is proposed to have been triggered during acute Pleistocene climatic downturns that compressed hominin populations into high-altitude, western Ethiopian montane refugia. Within these ecologically restricted zones, forced fallback subsistence on naturally caffeinated Coffea arabica berry ecosystems exposed already burdened nervous systems to chronic competitive antagonism of central adenosine receptors, inducing a state of neural metabolic strain that natural selection resolved through parsimonious neuronal scaling. This critical behavioral shift is proposed to have been permitted by a candidate molecular contributor—the derived aryl hydrocarbon receptor variant unique to modern humans—and a proposed physiological response encompassing hepatic clearance, maintenance of fluid balance, and cardiovascular accommodation to sustained stimulant exposure. A proposed regional mosaic model explains, within this framework, how highly encephalized archaic Eurasian lineages could retain ancestral receptor configurations while a different AHR variant became fixed in modern humans.

As this accelerated neural regime consolidated within the genus Homo, the lineage confronted a severe convergence of compounding metabolic bottlenecks. Obligate terrestrial bipedalism and high-throughput endurance running increasingly subjected hominins to chronic, low-grade intravascular footstrike hemolysis and sweating-induced iron loss, colliding directly with the immense nutritional requirements demanded by developing neural tissues. The sequence of this somatic and neural evolution was fundamentally shaped by high-altitude nocturnal thermal stress, which drove the early habitual control of fire for thermoregulation. The resulting energetic surplus financed a dramatic increase in overall body mass and stature, introducing a severe baseline iron debt that necessitated a definitive behavioral transition toward compulsory, habitual hunting. Because an obligate carnivorous infrastructure and cooking technologies were already firmly established to pre-finance these strict caloric, iron, and vitamin constraints, the lineage possessed the exact dietary pipeline required to sustain massive, highly active neuronal populations without triggering systemic metabolic bankruptcy. Finally, the model notes that this caffeine-driven encephalization loop was inherently self-limiting, as the expansion of the neural network itself gradually muted the specific selection pressure over deep evolutionary time.

Reading the argument

The guided chapters explain the manuscript in accessible stages. They distinguish the environmental setting, proposed physiological burdens, inferred evolutionary responses and the relationships among them. The complete PDF includes the author’s terminology, detailed claims and references.

The paper acknowledges that a definitive molecular pathway coupling persistent organism-level strain to targeted heritable change remains unresolved. Its broader evolutionary proposal should be assessed alongside that stated limitation.